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  5. GSVIVT01034780001

GSVIVT01034780001


Description : DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034780001

Target Alias Description ECC score Gene Family Method Actions
AT1G48650 No alias DEA(D/H)-box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g057149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16279 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66407.t1 Aspi01Gene66407 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene70473.t1 Aspi01Gene70473 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0449.g070725 No alias not classified & original description: CDS=208-3285 0.04 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10437209g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_22839g0010 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.04 OrthoFinder output from all 47 species
Mp8g13160.1 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g10298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014244 No alias not classified & original description: CDS=5030-5773 0.03 OrthoFinder output from all 47 species
Sam_g07185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g118920.3.1 Solyc03g118920 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 247 399
IPR001650 Helicase_C 506 636
IPR007502 Helicase-assoc_dom 700 788
IPR014720 dsRBD_dom 1037 1099
IPR011709 DEAD-box_helicase_OB_fold 856 937
No external refs found!