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Description : Casparian strip membrane protein 1 OS=Vitis vinifera
Gene families : OG0001933 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001933_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01033894001 | |
| Cluster | HCCA: Cluster_77 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G15610 | No alias | Uncharacterised protein family (UPF0497) | 0.03 | OrthoFinder output from all 47 species | |
| AT5G44550 | No alias | Uncharacterised protein family (UPF0497) | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01033020001 | No alias | CASP-like protein 1F2 OS=Vitis vinifera | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g26120.1 | LOC_Os01g26120 | CASP-like protein 1E1 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
| MA_94788g0010 | No alias | CASP-like protein 1U1 OS=Picea sitchensis... | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g16500.1 | No alias | CASP-like protein 1U1 OS=Marchantia polymorpha... | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g19380.1 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g067330.3.1 | Solyc01g067330 | CASP-like protein 1E1 OS=Glycine max... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc02g067190.4.1 | Solyc02g067190 | Casparian strip membrane protein 1 OS=Solanum tuberosum... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g097720.4.1 | Solyc03g097720 | CASP-like protein 1F1 OS=Vitis vinifera... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g072550.3.1 | Solyc06g072550 | CASP-like protein 1F1 OS=Vitis vinifera... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e006491_P001 | Zm00001e006491 | Casparian strip membrane protein 2 OS=Zea mays... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e024279_P001 | Zm00001e024279 | Casparian strip membrane protein 2 OS=Sorghum bicolor... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036094_P001 | Zm00001e036094 | Casparian strip membrane protein 1 OS=Zea mays... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | HCCA |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | HCCA |
| MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | HCCA |
| MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006702 | CASP_dom | 46 | 193 |
| No external refs found! |