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  5. GSVIVT01033862001

GSVIVT01033862001 (54CP, SRP54CP, CPSRP54, FFC)


Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component


Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033862001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00204460 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
AT5G03940 54CP, SRP54CP,... chloroplast signal recognition particle 54 kDa subunit 0.06 OrthoFinder output from all 47 species
Aev_g05995 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Aob_g13062 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Aop_g31519 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.06 OrthoFinder output from all 47 species
Cba_g29373 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Ceric.03G060800.1 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Cre11.g479750 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Dcu_g11802 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Dde_g10157 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Ehy_g19183 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Gb_10951 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from all 47 species
LOC_Os11g05552.1 54CP, SRP54CP,... Signal recognition particle 54 kDa protein,... 0.06 OrthoFinder output from all 47 species
LOC_Os11g05556.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from all 47 species
Len_g09132 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Lfl_g04096 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Mp1g05670.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.04 OrthoFinder output from all 47 species
Msp_g47300 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.02 OrthoFinder output from all 47 species
Nbi_g12082 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.06 OrthoFinder output from all 47 species
Ppi_g12402 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017848 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0444.g027392 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Sam_g29558 No alias component *(cpSRP54) of thylakoid membrane SRP insertion... 0.02 OrthoFinder output from all 47 species
Solyc09g009940.3.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.09 OrthoFinder output from all 47 species
Spa_g21337 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Zm00001e024147_P003 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.1 OrthoFinder output from all 47 species
Zm00001e039381_P004 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009235 cobalamin metabolic process IEP HCCA
BP GO:0009236 cobalamin biosynthetic process IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR004125 Signal_recog_particle_SRP54_M 405 503
IPR000897 SRP54_GTPase_dom 179 374
IPR013822 Signal_recog_particl_SRP54_hlx 84 161
No external refs found!