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  5. GSVIVT01033396001

GSVIVT01033396001 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : Pumilio homolog 12 OS=Arabidopsis thaliana


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033396001

Target Alias Description ECC score Gene Family Method Actions
Ala_g18476 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03238 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18418 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15341 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01979 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06465 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_63194g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g17261 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13343 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38740 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039541_P001 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 581 602
IPR001313 Pumilio_RNA-bd_rpt 474 503
IPR001313 Pumilio_RNA-bd_rpt 656 679
IPR001313 Pumilio_RNA-bd_rpt 545 570
IPR001313 Pumilio_RNA-bd_rpt 431 465
IPR000571 Znf_CCCH 253 274
No external refs found!