1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01033231001

GSVIVT01033231001 (ATINO80, INO80)


Aliases : ATINO80, INO80

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor


Gene families : OG0003922 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003922_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033231001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00190690 ATINO80, INO80,... Chromatin organisation.chromatin remodeling... 0.07 OrthoFinder output from all 47 species
Adi_g005520 ATINO80, INO80 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g107416 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Ala_g22698 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.13 OrthoFinder output from all 47 species
Als_g16557 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Als_g16558 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.05 OrthoFinder output from all 47 species
Aob_g12486 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.08 OrthoFinder output from all 47 species
Aop_g19078 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.09 OrthoFinder output from all 47 species
Aspi01Gene61035.t1 ATINO80, INO80,... ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Aspi01Gene61036.t1 ATINO80, INO80,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G047900.1 ATINO80, INO80,... ATPase component *(Ino80) of chromatin remodelling... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021501.9 ATINO80, INO80 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Dcu_g11743 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.13 OrthoFinder output from all 47 species
Dde_g25805 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.05 OrthoFinder output from all 47 species
Ehy_g12559 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.05 OrthoFinder output from all 47 species
Gb_04007 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.1 OrthoFinder output from all 47 species
LOC_Os03g22900.1 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.1 OrthoFinder output from all 47 species
Lfl_g05043 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.07 OrthoFinder output from all 47 species
MA_3312g0010 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.08 OrthoFinder output from all 47 species
Mp8g00130.1 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.09 OrthoFinder output from all 47 species
Nbi_g02503 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Ore_g02728 ATINO80, INO80 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16643 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Pir_g13631 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.05 OrthoFinder output from all 47 species
Ppi_g08475 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023246 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.09 OrthoFinder output from all 47 species
Sam_g11608 No alias ATPase component *(Ino80) of chromatin remodelling... 0.04 OrthoFinder output from all 47 species
Smo444050 ATINO80, INO80 Chromatin organisation.chromatin remodeling... 0.13 OrthoFinder output from all 47 species
Solyc04g016370.3.1 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.13 OrthoFinder output from all 47 species
Spa_g41400 ATINO80, INO80 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57104 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Zm00001e001678_P001 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.17 OrthoFinder output from all 47 species
Zm00001e038194_P002 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 607 895
IPR020838 DBINO 351 481
IPR001650 Helicase_C 1217 1326
No external refs found!