GSVIVT01032845001

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.light chain

Gene families : OG0002188 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002188_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01032845001
Cluster	HCCA: Cluster_92

Target	Alias	Description	ECC score	Gene Family Method
AT2G20760	No alias	Clathrin light chain protein	0.04	OrthoFinder output from all 47 species
Als_g08248	No alias	light chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g45363	No alias	light chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g45811	No alias	light chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g09281	No alias	light chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g32384	No alias	light chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g38862	No alias	light chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007566	No alias	light chain of clathrin triskelion & original...	0.02	OrthoFinder output from all 47 species
Solyc07g054180.4.1	Solyc07g054180	light chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005048	signal sequence binding	IEP	HCCA
BP	GO:0006621	protein retention in ER lumen	IEP	HCCA
BP	GO:0032507	maintenance of protein location in cell	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
BP	GO:0045185	maintenance of protein location	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046923	ER retention sequence binding	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051651	maintenance of location in cell	IEP	HCCA
BP	GO:0072595	maintenance of protein localization in organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000996	Clathrin_L-chain	3	139

External Links

No external refs found!