GSVIVT01031567001

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec23 component

Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01031567001
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00163370	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.07	OrthoFinder output from all 47 species
AT1G05520	No alias	Sec23/Sec24 protein transport family protein	0.03	OrthoFinder output from all 47 species
AT3G23660	No alias	Sec23/Sec24 protein transport family protein	0.05	OrthoFinder output from all 47 species
AT4G14160	No alias	Sec23/Sec24 protein transport family protein	0.05	OrthoFinder output from all 47 species
AT5G43670	No alias	Sec23/Sec24 protein transport family protein	0.04	OrthoFinder output from all 47 species
Adi_g083866	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Aev_g02536	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Ala_g02545	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Als_g14171	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Aob_g05331	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Aop_g02924	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Aop_g18354	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Azfi_s0118.g046613	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Cba_g18092	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Ceric.01G119200.1	Ceric.01G119200	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.15	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	OrthoFinder output from all 47 species
Dcu_g08265	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Dcu_g08281	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.06	OrthoFinder output from all 47 species
Gb_05558	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.06	OrthoFinder output from all 47 species
LOC_Os08g36994.1	LOC_Os08g36994	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
LOC_Os11g24560.1	LOC_Os11g24560	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Len_g09133	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Lfl_g02282	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
MA_90063g0010	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Mp7g12190.1	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.09	OrthoFinder output from all 47 species
Msp_g18554	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Nbi_g07000	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.07	OrthoFinder output from all 47 species
Ore_g15381	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g25550	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Pp3c3_29390V3.1	Pp3c3_29390	Sec23/Sec24 protein transport family protein	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010932	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Smo107900	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.04	OrthoFinder output from all 47 species
Smo168140	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.03	OrthoFinder output from all 47 species
Solyc01g081070.3.1	Solyc01g081070	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species
Solyc05g053830.3.1	Solyc05g053830	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Spa_g17950	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Spa_g53620	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Zm00001e005633_P001	Zm00001e005633	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.02	OrthoFinder output from all 47 species
Zm00001e008888_P001	Zm00001e008888	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Zm00001e021415_P001	Zm00001e021415	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
MF	GO:0050290	sphingomyelin phosphodiesterase D activity	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006896	Sec23/24_trunk_dom	109	334
IPR006900	Sec23/24_helical_dom	463	560
IPR006895	Znf_Sec23_Sec24	40	78
IPR007123	Gelsolin-like_dom	575	663
IPR012990	Sec23_24_beta_S	345	449

External Links

No external refs found!

GSVIVT01031567001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation