GSVIVT01030481001 (ATRTL1, RTL1)

Aliases : ATRTL1, RTL1

Description : Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01030481001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00127000	ATDCL3, DCL3,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	OrthoFinder output from all 47 species
AT4G15417	ATRTL1, RTL1	RNAse II-like 1	0.03	OrthoFinder output from all 47 species
Dac_g10602	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
Gb_37867	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Gb_37868	DCL1, CAF,...	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os03g38740.1	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Pir_g49639	DCL4, ATDCL4	component *(DRB7) of DRB4-DRB7.1 siRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Solyc07g049150.2.1	ATRTL1, RTL1,...	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp....	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	64	170

External Links

No external refs found!

GSVIVT01030481001 (ATRTL1, RTL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation