GSVIVT01030030001

Description : Polygalacturonase OS=Gossypium hirsutum

Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01030030001
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00270640	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.09	OrthoFinder output from all 47 species
AMTR_s00019p00058670	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.05	OrthoFinder output from all 47 species
AMTR_s00059p00207430	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	OrthoFinder output from all 47 species
AT1G02790	PGA4	polygalacturonase 4	0.03	OrthoFinder output from all 47 species
AT3G07820	No alias	Pectin lyase-like superfamily protein	0.07	OrthoFinder output from all 47 species
AT3G07840	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G48140	No alias	Pectin lyase-like superfamily protein	0.07	OrthoFinder output from all 47 species
GSVIVT01030017001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.05	OrthoFinder output from all 47 species
LOC_Os01g33300.1	LOC_Os01g33300	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
LOC_Os02g10300.1	LOC_Os02g10300	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
LOC_Os06g40890.1	LOC_Os06g40890	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.06	OrthoFinder output from all 47 species
Solyc01g066070.3.1	Solyc01g066070	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.08	OrthoFinder output from all 47 species
Solyc06g009200.3.1	PGA4, Solyc06g009200	Polygalacturonase OS=Nicotiana tabacum...	0.08	OrthoFinder output from all 47 species
Solyc12g006293.1.1	Solyc12g006293	Polygalacturonase OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Solyc12g006313.1.1	Solyc12g006313	Polygalacturonase OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Zm00001e025021_P003	Zm00001e025021	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.02	OrthoFinder output from all 47 species
Zm00001e026354_P001	Zm00001e026354	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e030524_P001	Zm00001e030524	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030528_P001	Zm00001e030528	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e030529_P001	Zm00001e030529	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030530_P001	Zm00001e030530	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.05	OrthoFinder output from all 47 species
Zm00001e030533_P001	Zm00001e030533	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e042494_P001	Zm00001e042494	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	53	321

External Links

No external refs found!

GSVIVT01030030001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation