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  5. GSVIVT01028861001

GSVIVT01028861001


Description : Probable polygalacturonase OS=Vitis vinifera


Gene families : OG0000312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028861001

Target Alias Description ECC score Gene Family Method Actions
AT1G19170 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G06770 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene03131.t1 Aspi01Gene03131 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.38G048100.1 Ceric.38G048100 EC_3.2 glycosylase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g06837 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Gb_10631 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Ore_g18475 No alias EC_3.2 glycosylase & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g48079 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11684 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g19667 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 147 332
No external refs found!