GSVIVT01028717001 (ATSIG5, SIG5, SIGE)

Aliases : ATSIG5, SIG5, SIGE

Description : RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor

Gene families : OG0006267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006267_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01028717001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00015p00252960	ATSIG5, SIG5,...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AMTR_s00015p00253000	ATSIG5, SIG5,...	RNA polymerase sigma factor sigE,...	0.04	OrthoFinder output from all 47 species
AT5G24120	ATSIG5, SIG5, SIGE	sigma factor E	0.11	OrthoFinder output from all 47 species
Aev_g03916	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ala_g08597	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene21613.t1	ATSIG5, SIG5,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Cba_g23756	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.02G065100.1	ATSIG5, SIG5,...	basal Sigma-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Dac_g17058	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Dde_g26757	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g01372	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
LOC_Os05g50930.1	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Lfl_g17419	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Mp3g02240.1	ATSIG5, SIG5, SIGE	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Msp_g47380	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Smo147096	ATSIG5, SIG5, SIGE	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
Solyc03g007370.3.1	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.06	OrthoFinder output from all 47 species
Spa_g22251	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Tin_g20273	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Zm00001e032596_P002	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	284	349
IPR007630	RNA_pol_sigma70_r4	453	506
IPR007624	RNA_pol_sigma70_r3	368	431
IPR007624	RNA_pol_sigma70_r3	240	278

External Links

No external refs found!

GSVIVT01028717001 (ATSIG5, SIG5, SIGE)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation