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  5. GSVIVT01028350001

GSVIVT01028350001


Description : Cell wall.pectin.rhamnogalacturonan II.synthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) synthesis.D-arabinose-5-phosphate isomerase


Gene families : OG0006389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028350001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Adi_g023295 No alias D-arabinose-5-phosphate isomerase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g05268 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17580 No alias D-arabinose-5-phosphate isomerase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39190 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27664 No alias D-arabinose-5-phosphate isomerase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.31G032000.1 Ceric.31G032000 D-arabinose-5-phosphate isomerase & original... 0.05 OrthoFinder output from all 47 species
Dcu_g05351 No alias D-arabinose-5-phosphate isomerase & original description: none 0.07 OrthoFinder output from all 47 species
Len_g07481 No alias D-arabinose-5-phosphate isomerase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06523 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g01638 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19861 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g098140.3.1 Solyc03g098140 D-arabinose-5-phosphate isomerase 0.02 OrthoFinder output from all 47 species
Spa_g01715 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0097367 carbohydrate derivative binding IEA Interproscan
BP GO:1901135 carbohydrate derivative metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001347 SIS_dom 78 149
IPR000644 CBS_dom 247 302
IPR000644 CBS_dom 179 236
No external refs found!