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  5. GSVIVT01028044001

GSVIVT01028044001 (PGA4)


Aliases : PGA4

Description : Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana


Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028044001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.19 OrthoFinder output from all 47 species
AMTR_s00019p00055210 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00058670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00130680 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00207430 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00207710 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AT1G02790 PGA4 polygalacturonase 4 0.07 OrthoFinder output from all 47 species
AT3G07820 No alias Pectin lyase-like superfamily protein 0.16 OrthoFinder output from all 47 species
AT3G07830 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G07840 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G07850 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G14040 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G48140 No alias Pectin lyase-like superfamily protein 0.11 OrthoFinder output from all 47 species
LOC_Os01g33300.1 LOC_Os01g33300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.1 OrthoFinder output from all 47 species
LOC_Os02g10300.1 LOC_Os02g10300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.1 OrthoFinder output from all 47 species
LOC_Os06g35320.1 LOC_Os06g35320 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.06 OrthoFinder output from all 47 species
LOC_Os06g40890.1 LOC_Os06g40890 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.11 OrthoFinder output from all 47 species
Solyc01g066070.3.1 Solyc01g066070 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.12 OrthoFinder output from all 47 species
Solyc06g009200.3.1 PGA4, Solyc06g009200 Polygalacturonase OS=Nicotiana tabacum... 0.12 OrthoFinder output from all 47 species
Solyc07g044870.4.1 Solyc07g044870 Polygalacturonase OS=Nicotiana tabacum... 0.08 OrthoFinder output from all 47 species
Solyc12g006293.1.1 Solyc12g006293 Polygalacturonase OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Solyc12g006313.1.1 Solyc12g006313 Polygalacturonase OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Zm00001e002846_P002 Zm00001e002846 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 OrthoFinder output from all 47 species
Zm00001e014066_P002 Zm00001e014066 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 OrthoFinder output from all 47 species
Zm00001e017747_P001 Zm00001e017747 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.05 OrthoFinder output from all 47 species
Zm00001e022246_P002 Zm00001e022246 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 OrthoFinder output from all 47 species
Zm00001e025021_P003 Zm00001e025021 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.09 OrthoFinder output from all 47 species
Zm00001e026354_P001 Zm00001e026354 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.1 OrthoFinder output from all 47 species
Zm00001e030524_P001 Zm00001e030524 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.06 OrthoFinder output from all 47 species
Zm00001e030525_P001 Zm00001e030525 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030528_P001 Zm00001e030528 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030529_P001 Zm00001e030529 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.06 OrthoFinder output from all 47 species
Zm00001e030530_P001 Zm00001e030530 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.08 OrthoFinder output from all 47 species
Zm00001e030532_P001 Zm00001e030532 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize : 345.0) 0.04 OrthoFinder output from all 47 species
Zm00001e030533_P001 Zm00001e030533 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.04 OrthoFinder output from all 47 species
Zm00001e030541_P001 Zm00001e030541 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030542_P001 Zm00001e030542 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e042494_P001 Zm00001e042494 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 72 389
No external refs found!