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  5. GSVIVT01027384001

GSVIVT01027384001


Description : Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027384001
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Adi_g059091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48152 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26096 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000737.24 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09454 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g34156 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.02 OrthoFinder output from all 47 species
Gb_27355 No alias Pentatricopeptide repeat-containing protein At5g11310,... 0.03 OrthoFinder output from all 47 species
Lfl_g07415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.02 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 OrthoFinder output from all 47 species
Msp_g08820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo126152 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species
Tin_g14951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 93 119
IPR002885 Pentatricopeptide_repeat 32 90
IPR002885 Pentatricopeptide_repeat 140 172
No external refs found!