- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.NUFIP assembly factor
Gene families : OG0003682 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003682_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01027215001 | |
| Cluster | HCCA: Cluster_30 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g22823 | No alias | snoRNP rRNA methylation complex assembly factor *(NUFIP)... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g63113 | No alias | snoRNP rRNA methylation complex assembly factor *(NUFIP)... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g08132 | No alias | snoRNP rRNA methylation complex assembly factor *(NUFIP)... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g20421 | No alias | snoRNP rRNA methylation complex assembly factor *(NUFIP)... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g59860.1 | LOC_Os01g59860 | NUFIP snoRNP rRNA methylation complex assembly factor | 0.02 | OrthoFinder output from all 47 species | |
| MA_10431482g0010 | No alias | NUFIP snoRNP rRNA methylation complex assembly factor | 0.03 | OrthoFinder output from all 47 species | |
| MA_30455g0010 | No alias | NUFIP snoRNP rRNA methylation complex assembly factor | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g07400 | No alias | snoRNP rRNA methylation complex assembly factor *(NUFIP)... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c27_4140V3.1 | Pp3c27_4140 | No annotation | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16776 | No alias | snoRNP rRNA methylation complex assembly factor *(NUFIP)... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g096920.3.1 | Solyc01g096920 | NUFIP snoRNP rRNA methylation complex assembly factor | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e019484_P003 | Zm00001e019484 | NUFIP snoRNP rRNA methylation complex assembly factor | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004177 | aminopeptidase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0030145 | manganese ion binding | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR019496 | NUFIP1_cons_dom | 321 | 370 |
| No external refs found! |