GSVIVT01026384001

Description : Secondary metabolism.nitrogen-containing secondary compounds.alkaloids.indole alkaloid synthesis.aromatic L-amino acid decarboxylase

Gene families : OG0003989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003989_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01026384001
Cluster	HCCA: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
AT2G20340	No alias	Pyridoxal phosphate (PLP)-dependent transferases...	0.04	OrthoFinder output from all 47 species
Gb_10830	No alias	aromatic L-amino acid decarboxylase	0.04	OrthoFinder output from all 47 species
LOC_Os05g43510.1	LOC_Os05g43510	aromatic L-amino acid decarboxylase	0.03	OrthoFinder output from all 47 species
LOC_Os10g23900.1	LOC_Os10g23900	aromatic L-amino acid decarboxylase	0.07	OrthoFinder output from all 47 species
LOC_Os10g26110.1	LOC_Os10g26110	aromatic L-amino acid decarboxylase	0.05	OrthoFinder output from all 47 species
Solyc03g045010.1.1	TYRDC1, TYRDC,...	Tyrosine decarboxylase 2 OS=Petroselinum crispum...	0.04	OrthoFinder output from all 47 species
Solyc07g054280.1.1	Solyc07g054280	aromatic L-amino acid decarboxylase	0.03	OrthoFinder output from all 47 species
Zm00001e000632_P001	Zm00001e000632	aromatic L-amino acid decarboxylase	0.02	OrthoFinder output from all 47 species
Zm00001e000634_P001	Zm00001e000634	aromatic L-amino acid decarboxylase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	IEA	Interproscan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	241	322
IPR002129	PyrdxlP-dep_de-COase	46	128

External Links

No external refs found!

GSVIVT01026384001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation