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  5. GSVIVT01025776001

GSVIVT01025776001


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED26 component


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025776001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00137160 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g014134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021757 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Adi_g076735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113666 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Aev_g32630 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Azfi_s0073.g037267 No alias not classified & original description: CDS=379-1959 0.05 OrthoFinder output from all 47 species
Cba_g16447 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Cba_g69237 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.15G055300.1 Ceric.15G055300 component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.22G058100.1 Ceric.22G058100 component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.31G055300.1 Ceric.31G055300 not classified & original description: pacid=50574382... 0.04 OrthoFinder output from all 47 species
Dcu_g19305 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Ehy_g18808 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
LOC_Os05g34210.1 LOC_Os05g34210 component MED26 of MEDIATOR transcription co-activator complex 0.05 OrthoFinder output from all 47 species
Len_g01212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01016 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ore_g17872 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Pnu_g08667 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Ppi_g17469 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003699 No alias component *(MED26) of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Solyc10g080930.2.1 Solyc10g080930 component MED26 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Solyc11g005450.3.1 Solyc11g005450 Probable mediator of RNA polymerase II transcription... 0.05 OrthoFinder output from all 47 species
Spa_g54824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027059_P003 Zm00001e027059 component MED26 of MEDIATOR transcription co-activator complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008987 quinolinate synthetase A activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009435 NAD biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019674 NAD metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 68 116
No external refs found!