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  5. GSVIVT01025432001

GSVIVT01025432001 (At-SCL30A, SCL30A)


Aliases : At-SCL30A, SCL30A

Description : Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025432001

Target Alias Description ECC score Gene Family Method Actions
AT1G55310 SR33, At-SCL33,... SC35-like splicing factor 33 0.04 OrthoFinder output from all 47 species
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.04 OrthoFinder output from all 47 species
Adi_g014842 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057192 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12283 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g69799 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08086 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_06441 At-SCL30A, SCL30A no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g15310.1 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os12g38430.1 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Nbi_g08689 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g02221 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002967_P002 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Zm00001e020950_P002 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 40 78
IPR000504 RRM_dom 90 133
No external refs found!