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  5. GSVIVT01025275001

GSVIVT01025275001 (emb2738)


Aliases : emb2738

No description available


Gene families : OG0006217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025275001
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00249930 emb2738,... No description available 0.04 OrthoFinder output from all 47 species
AT3G12080 emb2738 GTP-binding family protein 0.12 OrthoFinder output from all 47 species
Adi_g055754 emb2738 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g03286 emb2738 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g64838 emb2738 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G078300.1 emb2738, Ceric.03G078300 not classified & original description: pacid=50572633... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.28 emb2738 No description available 0.03 OrthoFinder output from all 47 species
Cre16.g658450 emb2738 No description available 0.03 OrthoFinder output from all 47 species
Dcu_g09756 emb2738 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g13342 emb2738 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_22538 emb2738 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os11g41910.1 emb2738, LOC_Os11g41910 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Len_g17773 emb2738 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05544 emb2738 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g03840.1 emb2738 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Pir_g48494 emb2738 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25600 emb2738 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0264.g026925 emb2738 not classified & original description: CDS=87-1838 0.05 OrthoFinder output from all 47 species
Solyc11g065870.3.1 emb2738, Solyc11g065870 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e011327_P001 emb2738, Zm00001e011327 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 365 486
IPR006073 GTP-bd 189 303
IPR032859 KH_dom-like 545 626
No external refs found!