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  5. GSVIVT01025102001

GSVIVT01025102001


Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT4 component


Gene families : OG0003273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025102001

Target Alias Description ECC score Gene Family Method Actions
AT5G60170 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.07 OrthoFinder output from all 47 species
Adi_g019442 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aev_g34034 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Ala_g09045 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.06 OrthoFinder output from all 47 species
Als_g29069 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aop_g13675 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene33440.t2 Aspi01Gene33440 component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Dcu_g07158 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Dde_g04458 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
LOC_Os12g01190.2 LOC_Os12g01190 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.1 OrthoFinder output from all 47 species
Lfl_g34846 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
MA_26070g0010 No alias component NOT4 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Ore_g37215 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Pir_g03113 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019919 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Sam_g07950 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Sam_g37605 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Smo76400 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Solyc06g005190.4.1 Solyc06g005190 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Solyc11g072590.3.1 Solyc11g072590 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 190
No external refs found!