GSVIVT01024906001

Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.SRm160 component

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01024906001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00256890	evm_27.TU.AmTr_v1...	RNA processing.RNA quality control Exon Junction complex...	0.06	OrthoFinder output from all 47 species
Adi_g019655	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g07320	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Ceric.35G044600.1	Ceric.35G044600	component *(SRm160) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
Dac_g07102	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g18749	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Dde_g21232	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Dde_g23077	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_17180	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Gb_33063	No alias	component SRm160 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species
Lfl_g10938	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.08	OrthoFinder output from all 47 species
Mp8g09170.1	No alias	component SRm160 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species
Pir_g61010	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Tin_g23972	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	46	115

External Links

No external refs found!

GSVIVT01024906001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation