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Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor
Gene families : OG0001550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001550_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01024778001 | |
| Cluster | HCCA: Cluster_6 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00197580 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.C2H2 zinc... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00029p00226800 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.C2H2 zinc... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G11490 | No alias | zinc finger (C2H2 type) family protein | 0.06 | OrthoFinder output from all 47 species | |
| AT1G75710 | No alias | C2H2-like zinc finger protein | 0.03 | OrthoFinder output from all 47 species | |
| AT2G29660 | No alias | zinc finger (C2H2 type) family protein | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g06515 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g16586 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g12232 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene10004.t1 | Aspi01Gene10004 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0305.g063895 | No alias | not classified & original description: CDS=1048-1284 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g33322 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.17G019700.1 | Ceric.17G019700 | not classified & original description: pacid=50618170... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.32G006400.1 | Ceric.32G006400 | not classified & original description: pacid=50597460... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008925001 | No alias | RNA biosynthesis.transcriptional activation.C2H2 zinc... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_32332 | No alias | C2H2 zinc finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Gb_32897 | No alias | C2H2 zinc finger transcription factor | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g57650.1 | LOC_Os01g57650 | C2H2 zinc finger transcription factor | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os03g15790.1 | LOC_Os03g15790 | C2H2 zinc finger transcription factor | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g59380.1 | LOC_Os04g59380 | C2H2 zinc finger transcription factor | 0.04 | OrthoFinder output from all 47 species | |
| Len_g01208 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10426153g0010 | No alias | C2H2 zinc finger transcription factor | 0.05 | OrthoFinder output from all 47 species | |
| MA_525155g0010 | No alias | C2H2 zinc finger transcription factor | 0.04 | OrthoFinder output from all 47 species | |
| MA_5608g0010 | No alias | C2H2 zinc finger transcription factor | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g13834 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g19150 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g26989 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g26086 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0089.g018625 | No alias | not classified & original description: CDS=1-1434 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0147.g023140 | No alias | not classified & original description: CDS=905-2272 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g081370.2.1 | Solyc04g081370 | C2H2 zinc finger transcription factor | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g50745 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g17139 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e019606_P002 | Zm00001e019606 | C2H2 zinc finger transcription factor | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e024498_P001 | Zm00001e024498 | C2H2 zinc finger transcription factor | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |