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Aliases : ATPAL1, PAL1
Description : Secondary metabolism.phenolics.p-coumaroyl-CoA synthesis.phenylalanine ammonia lyase (PAL)
Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01024295001 | |
| Cluster | HCCA: Cluster_55 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00024p00201680 | ATPAL2, PAL2,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00024p00201930 | ATPAL2, PAL2,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00024p00202590 | ATPAL2, PAL2,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00032p00159210 | PAL4,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.06 | OrthoFinder output from all 47 species | |
| AT2G37040 | ATPAL1, PAL1 | PHE ammonia lyase 1 | 0.05 | OrthoFinder output from all 47 species | |
| AT3G10340 | PAL4 | phenylalanine ammonia-lyase 4 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g018721 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g059368 | ATPAL1, PAL1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g084112 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g107906 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g37417 | ATPAL2, PAL2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g39212 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g39213 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g43680 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07821 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30887 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g37142 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g11512 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene05640.t1 | PAL4, Aspi01Gene05640 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene07514.t1 | PAL4, Aspi01Gene07514 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene41825.t1 | PAL4, Aspi01Gene41825 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0063.g035292 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2358 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0163.g054246 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0205.g057722 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.14G035000.1 | PAL4, Ceric.14G035000 | EC_4.3 carbon-nitrogen lyase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G035200.1 | PAL4, Ceric.14G035200 | EC_4.3 carbon-nitrogen lyase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.28G008100.1 | PAL4, Ceric.28G008100 | EC_4.3 carbon-nitrogen lyase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g08062 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g09248 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08202 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g24302 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g18475 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01006148001 | PAL4 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01015124001 | ATPAL2, PAL2 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01016257001 | ATPAL2, PAL2 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01024294001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_01672 | ATPAL2, PAL2 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_10978 | ATPAL2, PAL2 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_16672 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_21115 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g41650.3 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g41670.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os02g41680.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g43800.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g35290.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Len_g38249 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g50108 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_15852g0010 | ATPAL2, PAL2 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| MA_189052g0010 | ATPAL1, PAL1 | Phenylalanine ammonia-lyase OS=Pinus taeda... | 0.04 | OrthoFinder output from all 47 species | |
| Mp1g05190.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Mp1g05220.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g10150.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| Mp4g10060.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g14110.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Mp4g14130.1 | ATPAL2, PAL2 | Phenylalanine ammonia-lyase class 1 (Fragment)... | 0.06 | OrthoFinder output from all 47 species | |
| Mp4g14140.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Mp4g14160.1 | ATPAL2, PAL2 | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Mp4g14170.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.07 | OrthoFinder output from all 47 species | |
| Mp4g14210.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.07 | OrthoFinder output from all 47 species | |
| Mp7g14880.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g29412 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g08420 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g08621 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g10300 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g16429 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g21799 | ATPAL1, PAL1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g36179 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g40427 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g26446 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g18294 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c10_21810V3.1 | PAL4, Pp3c10_21810 | phenylalanine ammonia-lyase 4 | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c17_7320V3.1 | Pp3c17_7320 | No annotation | 0.01 | OrthoFinder output from all 47 species | |
| Pp3c21_7640V3.1 | ATPAL2, PAL2, Pp3c21_7640 | phenylalanine ammonia-lyase 2 | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c24_13110V3.1 | PAL4, Pp3c24_13110 | phenylalanine ammonia-lyase 4 | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57238 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0017.g007129 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0091.g018764 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2271 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0157.g023740 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-771 | 0.04 | OrthoFinder output from all 47 species | |
| Smo424403 | ATPAL2, PAL2 | Phenylalanine ammonia-lyase OS=Citrus limon | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g042560.3.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g071870.1.1 | ATPAL1, PAL1,... | Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g056170.3.1 | ATPAL2, PAL2,... | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g007910.4.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc10g011920.3.1 | ATPAL1, PAL1,... | Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g011930.1.1 | ATPAL1, PAL1,... | Phenylalanine ammonia-lyase OS=Solanum lycopersicum... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g086180.2.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g08001 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e005064_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e015155_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e015156_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023033_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0004592 | pantoate-beta-alanine ligase activity | IEP | HCCA |
| MF | GO:0004601 | peroxidase activity | IEP | HCCA |
| MF | GO:0005506 | iron ion binding | IEP | HCCA |
| BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | HCCA |
| BP | GO:0006766 | vitamin metabolic process | IEP | HCCA |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006979 | response to oxidative stress | IEP | HCCA |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0015939 | pantothenate metabolic process | IEP | HCCA |
| BP | GO:0015940 | pantothenate biosynthetic process | IEP | HCCA |
| MF | GO:0016209 | antioxidant activity | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | HCCA |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | HCCA |
| MF | GO:0020037 | heme binding | IEP | HCCA |
| MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0042545 | cell wall modification | IEP | HCCA |
| MF | GO:0046906 | tetrapyrrole binding | IEP | HCCA |
| BP | GO:0050896 | response to stimulus | IEP | HCCA |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0071555 | cell wall organization | IEP | HCCA |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |