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  5. GSVIVT01023393001

GSVIVT01023393001 (CHR20, ATRX)


Aliases : CHR20, ATRX

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad54-like group.ATRX chromatin remodeling factor


Gene families : OG0003866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023393001

Target Alias Description ECC score Gene Family Method Actions
AT1G08600 CHR20, ATRX P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
Adi_g021727 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19513 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21446 CHR20, ATRX not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g16593 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g13390 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09035 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14539.t1 CHR20, ATRX,... chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40159.t1 CHR20, ATRX,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G086900.1 CHR20, ATRX,... chromatin remodeling factor *(ATRX) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.26 CHR20, ATRX Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021760.3 CHR20, ATRX Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g34455 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09273 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os10g31970.1 CHR20, ATRX,... chromatin remodeling factor (ATRX) 0.04 OrthoFinder output from all 47 species
Len_g57086 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03487 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.07 OrthoFinder output from all 47 species
Mp5g21000.1 CHR20, ATRX chromatin remodeling factor (ATRX) 0.03 OrthoFinder output from all 47 species
Pir_g00674 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo441095 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Solyc04g050150.4.1 CHR20, ATRX,... chromatin remodeling factor (ATRX) 0.08 OrthoFinder output from all 47 species
Solyc04g050160.4.1 CHR20, ATRX,... Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g06181 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32163 CHR20, ATRX chromaTin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 726 1028
IPR001650 Helicase_C 1112 1234
No external refs found!