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  5. GSVIVT01023159001

GSVIVT01023159001 (GRP23)


Aliases : GRP23

Description : Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana


Gene families : OG0010708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010708_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023159001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00236970 emb1796,... Pentatricopeptide repeat-containing protein At3g49240,... 0.05 OrthoFinder output from all 47 species
AT3G49240 emb1796 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Gb_00314 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g30240.1 GRP23, LOC_Os05g30240 Pentatricopeptide repeat-containing protein At1g10270... 0.03 OrthoFinder output from all 47 species
MA_118904g0010 emb1796 Pentatricopeptide repeat-containing protein At1g10270... 0.03 OrthoFinder output from all 47 species
Solyc01g103160.3.1 GRP23, Solyc01g103160 Pentatricopeptide repeat-containing protein At1g10270... 0.05 OrthoFinder output from all 47 species
Solyc03g083280.4.1 emb1796, Solyc03g083280 Pentatricopeptide repeat-containing protein At3g49240,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 394 418
IPR002885 Pentatricopeptide_repeat 208 237
IPR002885 Pentatricopeptide_repeat 498 527
IPR002885 Pentatricopeptide_repeat 313 341
IPR002885 Pentatricopeptide_repeat 136 159
IPR002885 Pentatricopeptide_repeat 244 271
IPR002885 Pentatricopeptide_repeat 354 378
IPR002885 Pentatricopeptide_repeat 166 188
No external refs found!