GSVIVT01023149001 (ARF1)


Aliases : ARF1

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023149001

Target Alias Description ECC score Gene Family Method Actions
Adi_g001040 ARF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088063 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088539 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g089250 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103007 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g110090 ARF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02591 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07961 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04069 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G004000.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.93 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g06468 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08602 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08691 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016266001 ARF16 Auxin response factor 18 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
GSVIVT01025198001 ARF10 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
LOC_Os01g48060.1 ARF3, ETT, LOC_Os01g48060 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os12g29520.1 HSS, ARF1-BP,... transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
LOC_Os12g41950.1 ARF6, LOC_Os12g41950 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Lfl_g07404 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431695g0010 ARF19, IAA22, ARF11 Auxin response factor 19 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Ore_g42999 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25926 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000212 ARF4 not classified & original description: CDS=1-1212 0.02 OrthoFinder output from all 47 species
Smo424114 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Solyc05g056040.3.1 ARF11, Solyc05g056040 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e006640_P002 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e028396_P001 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e039552_P004 HSS, ARF1-BP,... transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e041866_P001 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 228
IPR010525 ARF_dom 254 337
IPR033389 AUX/IAA_dom 550 643
No external refs found!