GSVIVT01022235001 (ATGCN5, GCN5)

Aliases : ATGCN5, GCN5

Description : ABC transporter F family member 5 OS=Arabidopsis thaliana

Gene families : OG0003045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003045_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01022235001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00247660	ATGCN5, GCN5,...	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AT5G64840	ATGCN5, GCN5	general control non-repressible 5	0.06	OrthoFinder output from all 47 species
Aev_g12591	ATGCN5, GCN5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04195	ATGCN5, GCN5	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g02291	ATGCN5, GCN5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g07329	ATGCN5, GCN5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0168.g054635	ATGCN5, GCN5	not classified & original description: CDS=239-2245	0.08	OrthoFinder output from all 47 species
Ceric.29G008900.1	ATGCN5, GCN5,...	not classified & original description: pacid=50624672...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000269.102	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre06.g265100	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre08.g372250	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dac_g12683	ATGCN5, GCN5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g28626	ATGCN5, GCN5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g07651	ATGCN5, GCN5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_01082	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os11g39020.1	ATGCN5, GCN5,...	ABC transporter F family member 5 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Len_g13114	ATGCN5, GCN5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g58557	ATGCN5, GCN5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10437027g0010	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp7g11090.1	ATGCN5, GCN5	ABC transporter F family member 5 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Msp_g14610	ATGCN5, GCN5	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Nbi_g11528	ATGCN5, GCN5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g30372	ATGCN5, GCN5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g11340	ATGCN5, GCN5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19383	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc04g051800.3.1	ATGCN5, GCN5,...	ABC transporter F family member 5 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Spa_g18685	ATGCN5, GCN5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g11682	ATGCN5, GCN5	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e011297_P001	ATGCN5, GCN5,...	ABC transporter F family member 5 OS=Arabidopsis...	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004096	catalase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	HCCA
BP	GO:0006541	glutamine metabolic process	IEP	HCCA
BP	GO:0006542	glutamine biosynthetic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016211	ammonia ligase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	116	251
IPR003439	ABC_transporter-like_ATP-bd	404	535
IPR032781	ABC_tran_Xtn	290	377

External Links

No external refs found!

GSVIVT01022235001 (ATGCN5, GCN5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation