Description : RNA biosynthesis.transcriptional activation.B3 superfamily.REM transcription factor
Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00077p00151100 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00078p00115450 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g25439 | No alias | REM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g03895 | No alias | REM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.02G084400.1 | Ceric.02G084400 | REM-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g23727 | No alias | REM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g41437 | No alias | REM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g08620.1 | LOC_Os03g08620 | transcription factor (REM) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g44971 | No alias | REM-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g34487 | No alias | REM-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g108140.4.1 | Solyc01g108140 | transcription factor (REM) | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g090710.3.1 | Solyc02g090710 | transcription factor (REM) | 0.08 | OrthoFinder output from all 47 species | |
Solyc04g079130.2.1 | Solyc04g079130 | transcription factor (REM) | 0.04 | OrthoFinder output from all 47 species | |
Solyc06g034140.3.1 | Solyc06g034140 | transcription factor (REM) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e020584_P001 | Zm00001e020584 | transcription factor (REM) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e021364_P001 | Zm00001e021364 | B3 domain-containing protein Os11g0197600 OS=Oryza... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
BP | GO:0006400 | tRNA modification | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
MF | GO:0008276 | protein methyltransferase activity | IEP | HCCA |
MF | GO:0008378 | galactosyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | HCCA |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
MF | GO:0018024 | histone lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
MF | GO:0042054 | histone methyltransferase activity | IEP | HCCA |
MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003340 | B3_DNA-bd | 140 | 230 |
No external refs found! |