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  5. GSVIVT01021618001

GSVIVT01021618001 (EMB2271)


Aliases : EMB2271

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Rrp9/YAO1 assembly factor


Gene families : OG0006246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021618001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00078230 EMB2271,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
AT4G05410 YAO Transducin/WD40 repeat-like superfamily protein 0.09 OrthoFinder output from all 47 species
Ala_g12212 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Aop_g07802 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0283.g063046 YAO SSU processome assembly factor *(RRP9/YAO1) & original... 0.05 OrthoFinder output from all 47 species
Ceric.23G029700.1 EMB2271, Ceric.23G029700 SSU processome assembly factor *(RRP9/YAO1) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021179.21 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Cre06.g278175 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g31380 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Gb_41592 YAO SSU processome assembly factor (RRP9/YAO1) 0.08 OrthoFinder output from all 47 species
LOC_Os03g42770.1 YAO, LOC_Os03g42770 SSU processome assembly factor (RRP9/YAO1) 0.12 OrthoFinder output from all 47 species
MA_10426194g0010 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.11 OrthoFinder output from all 47 species
Mp8g03800.1 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.12 OrthoFinder output from all 47 species
Pir_g19313 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009870 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g17762 No alias SSU processome assembly factor *(RRP9/YAO1) & original... 0.05 OrthoFinder output from all 47 species
Solyc02g069770.3.1 EMB2271, Solyc02g069770 SSU processome assembly factor (RRP9/YAO1) 0.13 OrthoFinder output from all 47 species
Spa_g18346 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Tin_g17456 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e005033_P001 YAO, Zm00001e005033 SSU processome assembly factor (RRP9/YAO1) 0.07 OrthoFinder output from all 47 species
Zm00001e012407_P002 EMB2271, Zm00001e012407 SSU processome assembly factor (RRP9/YAO1) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 429 455
IPR001680 WD40_repeat 258 295
IPR001680 WD40_repeat 345 375
IPR001680 WD40_repeat 224 253
No external refs found!