1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01021617001

GSVIVT01021617001 (CPSF30, ATCPSF30)


Aliases : CPSF30, ATCPSF30

Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF30/Yth1 component


Gene families : OG0003202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003202_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021617001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00079840 CPSF30,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Adi_g103334 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aob_g28233 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.29G075600.1 CPSF30,... component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Cre24.g755647 CPSF30, ATCPSF30 30-kDa cleavage and polyadenylation specificity factor... 0.02 OrthoFinder output from all 47 species
Gb_34616 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
LOC_Os06g46400.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
MA_10428531g0010 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Mp6g15200.1 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Ore_g30876 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Pir_g42075 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017792 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Sam_g17308 No alias component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Solyc02g021760.3.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Solyc02g070240.3.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g37920 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Zm00001e012971_P001 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 174 308
No external refs found!