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  5. GSVIVT01021518001

GSVIVT01021518001


Description : RNA biosynthesis.transcriptional activation.TIFY transcription factor


Gene families : OG0009767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021518001
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AT1G30135 JAZ8, TIFY5A jasmonate-zim-domain protein 8 0.05 OrthoFinder output from all 47 species
AT2G34600 JAZ7, TIFY5B jasmonate-zim-domain protein 7 0.05 OrthoFinder output from all 47 species
AT3G22275 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.04 OrthoFinder output from all 47 species
GSVIVT01000967001 JAS1, JAZ10, TIFY9 RNA biosynthesis.transcriptional activation.TIFY... 0.05 OrthoFinder output from all 47 species
GSVIVT01021516001 JAZ8, TIFY5A RNA biosynthesis.transcriptional activation.TIFY... 0.04 OrthoFinder output from all 47 species
Solyc08g036620.4.1 JAZ8, TIFY5A,... transcription factor (TIFY) 0.08 OrthoFinder output from all 47 species
Solyc08g036660.4.1 JAS1, JAZ10,... transcription factor (TIFY) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010399 Tify_dom 14 46
IPR018467 CCT_CS 74 94
No external refs found!