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  5. GSVIVT01021424001

GSVIVT01021424001


Description : High mobility group B protein 14 OS=Arabidopsis thaliana


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021424001
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT1G20696 NFD03, HMGB3, NFD3 high mobility group B3 0.05 OrthoFinder output from all 47 species
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.04 OrthoFinder output from all 47 species
Ceric.38G024600.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Cre06.g261450 ATHMG, HMG, SSRP1, NFD No description available 0.04 OrthoFinder output from all 47 species
Gb_22387 No alias High mobility group B protein 14 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Msp_g41318 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pir_g18092 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Smo73858 No alias High mobility group B protein 6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc02g082700.3.1 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 88 156
No external refs found!