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  5. GSVIVT01020561001

GSVIVT01020561001


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0002401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020561001
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00041060 evm_27.TU.AmTr_v1... Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00045230 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AMTR_s00063p00154030 ORG2, BHLH038,... Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.03 OrthoFinder output from all 47 species
AT1G10585 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G12540 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G62975 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G71200 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G20970 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
AT4G25400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G25410 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G51780 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
Ehy_g30730 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018460001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01018461001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
Gb_26737 No alias transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
LOC_Os01g01870.1 LOC_Os01g01870 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_14352g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_14544g0010 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_384190g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_57970g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_938775g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Pir_g39777 No alias bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g45090 ORG3, BHLH039 bHLH-Ib-class transcriptional regulator of copper/iron... 0.04 OrthoFinder output from all 47 species
Pir_g47256 No alias bHLH-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g48171 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g50631 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g078130.3.1 Solyc02g078130 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc03g114230.2.1 Solyc03g114230 Transcription factor bHLH162 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Solyc03g114237.1.1 Solyc03g114237 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc10g008247.1.1 Solyc10g008247 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc10g008260.2.1 Solyc10g008260 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Solyc10g079650.2.1 BHLH100, Solyc10g079650 transcription factor (bHLH). iron/copper homeostasis... 0.03 OrthoFinder output from all 47 species
Solyc10g079660.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.04 OrthoFinder output from all 47 species
Solyc10g079680.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.03 OrthoFinder output from all 47 species
Solyc12g010585.1.1 Solyc12g010585 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc12g010595.1.1 Solyc12g010595 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e017129_P001 Zm00001e017129 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004970 ionotropic glutamate receptor activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005230 extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022824 transmitter-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022835 transmitter-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030594 neurotransmitter receptor activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 21 72
No external refs found!