GSVIVT01020233001

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).RBM25 pre-mRNA splicing regulator

Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01020233001
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AT1G60200	No alias	splicing factor PWI domain-containing protein / RNA...	0.04	OrthoFinder output from all 47 species
Adi_g041603	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086381	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086383	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g46746	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g48145	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g32156	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g56861	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g32231	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g17534	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g58521	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.06G082400.1	Ceric.06G082400	pre-mRNA splicing factor *(RBM25) & original...	0.04	OrthoFinder output from all 47 species
Cre08.g375084	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g39951	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g09612	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g09390	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g39469	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.05	OrthoFinder output from all 47 species
Mp4g16880.1	No alias	pre-mRNA splicing factor (RBM25)	0.05	OrthoFinder output from all 47 species
Msp_g14073	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g60660	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g09240	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g24199	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g40329	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g18982	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e022382_P002	Zm00001e022382	pre-mRNA splicing factor (RBM25)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	109	178
IPR002483	PWI_dom	750	814

External Links

No external refs found!

GSVIVT01020233001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation