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  5. GSVIVT01019028001

GSVIVT01019028001


Description : Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.SAP30 associated component


Gene families : OG0001072 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019028001

Target Alias Description ECC score Gene Family Method Actions
AT1G19330 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.05 OrthoFinder output from all 47 species
Adi_g002827 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Adi_g009990 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Adi_g016707 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Adi_g042773 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Adi_g115577 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aev_g02770 No alias associated component *(AFR) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
Aev_g06518 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Aev_g20897 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Als_g21449 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Als_g23594 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aob_g03263 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Aob_g17167 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aop_g26979 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Aspi01Gene11427.t1 Aspi01Gene11427 associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Azfi_s0084.g038914 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g042962 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Azfi_s0305.g063893 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Cba_g50138 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Ceric.07G066600.1 Ceric.07G066600 associated component *(AFR) of histone deacetylase... 0.07 OrthoFinder output from all 47 species
Ceric.18G085500.1 Ceric.18G085500 associated component *(AFR) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
Ceric.28G016000.1 Ceric.28G016000 associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Dcu_g38581 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Dde_g06294 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ehy_g08311 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Gb_06121 No alias associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Gb_23696 No alias associated component SAP30 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
LOC_Os04g08450.3 LOC_Os04g08450 associated component SAP30 of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species
LOC_Os10g21460.1 LOC_Os10g21460 associated component SAP30 of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Len_g14311 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Len_g16678 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Lfl_g18360 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
MA_26597g0010 No alias associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Mp7g07500.1 No alias associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Msp_g01397 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Msp_g09871 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Nbi_g42971 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Pir_g00912 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ppi_g30334 No alias associated component *(AFR) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023138 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Sam_g20047 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Sam_g30195 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Solyc04g079930.3.1 Solyc04g079930 associated component SAP30 of histone deacetylase machineries 0.09 OrthoFinder output from all 47 species
Solyc08g081310.4.1 Solyc08g081310 associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Spa_g11049 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Spa_g18677 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Tin_g10450 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Tin_g12084 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Zm00001e027006_P001 Zm00001e027006 associated component SAP30 of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 175 227
No external refs found!