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  5. GSVIVT01018981001

GSVIVT01018981001 (U1-70K, U1SNRNP)


Aliases : U1-70K, U1SNRNP

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1-70K snRNP component


Gene families : OG0003392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018981001
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Als_g10647 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.07 OrthoFinder output from all 47 species
Aob_g13725 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g04623 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g27207 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Cba_g60536 U1-70K, U1SNRNP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G033200.1 U1-70K, U1SNRNP,... component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cre16.g656250 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g10772 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Dcu_g24491 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Dde_g50672 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Gb_32834 U1-70K, U1SNRNP U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g02630.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
MA_104182g0010 U1-70K, U1SNRNP component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species
MA_10426294g0010 U1-70K, U1SNRNP component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
Pir_g35785 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Sam_g15737 No alias component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Sam_g27555 No alias component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Smo58751 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc02g085420.4.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.06 OrthoFinder output from all 47 species
Tin_g11433 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e012949_P002 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 140 209
IPR022023 U1snRNP70_N 41 129
No external refs found!