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  5. GSVIVT01018952001

GSVIVT01018952001


No description available


Gene families : OG0006078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018952001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00062890 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G63810 No alias CONTAINS InterPro DOMAIN/s: Nrap protein... 0.16 OrthoFinder output from all 47 species
Als_g15877 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Aop_g09599 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Cba_g13464 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Ceric.24G063300.1 Ceric.24G063300 pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.6 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre07.g332800 No alias No description available 0.07 OrthoFinder output from all 47 species
Dcu_g25897 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.09 OrthoFinder output from all 47 species
Dde_g19844 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Gb_07104 No alias pre-40S ribosomal subunit assembly factor (UTP22) 0.04 OrthoFinder output from all 47 species
LOC_Os12g06910.1 LOC_Os12g06910 pre-40S ribosomal subunit assembly factor (UTP22) 0.14 OrthoFinder output from all 47 species
Lfl_g02369 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
MA_10427874g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10436389g0010 No alias pre-40S ribosomal subunit assembly factor (UTP22) 0.04 OrthoFinder output from all 47 species
Mp6g08990.1 No alias pre-40S ribosomal subunit assembly factor (UTP22) 0.14 OrthoFinder output from all 47 species
Msp_g26114 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Ore_g26767 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.04 OrthoFinder output from all 47 species
Pir_g16349 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Ppi_g45365 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0180.g024789 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Sam_g08101 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Smo407792 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc02g085230.3.1 Solyc02g085230 pre-40S ribosomal subunit assembly factor (UTP22) 0.09 OrthoFinder output from all 47 species
Spa_g12823 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Tin_g02885 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Zm00001e018445_P001 Zm00001e018445 pre-40S ribosomal subunit assembly factor (UTP22) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR035082 Nrap_D1 98 231
IPR035368 Nrap_D3 390 544
IPR035371 Nrap_D6 919 1056
IPR035367 Nrap_D2 239 385
IPR035369 Nrap_D4 572 750
IPR035370 Nrap_D5 753 906
No external refs found!