GSVIVT01017853001


Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component


Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017853001

Target Alias Description ECC score Gene Family Method Actions
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.07 OrthoFinder output from all 47 species
Adi_g087186 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Als_g59791 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Aob_g16280 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Aop_g11533 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.04 OrthoFinder output from all 47 species
Aspi01Gene41923.t1 Aspi01Gene41923 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0682.g082025 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 OrthoFinder output from all 47 species
Cba_g62248 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Ceric.08G063500.1 Ceric.08G063500 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001278.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Dcu_g05843 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.04 OrthoFinder output from all 47 species
GSVIVT01012414001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
LOC_Os07g45160.1 LOC_Os07g45160 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.04 OrthoFinder output from all 47 species
MA_10433322g0010 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.06 OrthoFinder output from all 47 species
Ppi_g14323 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.09 OrthoFinder output from all 47 species
Sam_g19237 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Sam_g50982 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 OrthoFinder output from all 47 species
Smo438035 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Solyc12g035670.3.1 Solyc12g035670 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.08 OrthoFinder output from all 47 species
Zm00001e035716_P003 Zm00001e035716 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3_conserved 379 677
No external refs found!