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  5. GSVIVT01017305001

GSVIVT01017305001


Description : Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017305001
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00250890 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 OrthoFinder output from all 47 species
AMTR_s00085p00112760 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00096p00105250 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 OrthoFinder output from all 47 species
AMTR_s00104p00026540 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AT1G10640 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G60590 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G70500 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G01890 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G14650 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g112354 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28456 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04943 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14084 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01536 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12304 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13416.t1 Aspi01Gene13416 EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene44829.t1 Aspi01Gene44829 EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46866.t1 Aspi01Gene46866 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024436 No alias EC_3.2 glycosylase & original description: CDS=1-1320 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042602 No alias EC_3.2 glycosylase & original description: CDS=1-1503 0.03 OrthoFinder output from all 47 species
Azfi_s0157.g053776 No alias EC_3.2 glycosylase & original description: CDS=175-1677 0.07 OrthoFinder output from all 47 species
Ceric.20G025000.1 Ceric.20G025000 EC_3.2 glycosylase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g11602 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03879 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43003 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g44374 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22868 No alias polygalacturonase *(PGX1-like) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008061001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.07 OrthoFinder output from all 47 species
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.07 OrthoFinder output from all 47 species
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01028132001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01032114001 QRT2 Polygalacturonase OS=Actinidia deliciosa 0.06 OrthoFinder output from all 47 species
GSVIVT01032117001 QRT2 Cell wall.pectin.modification and... 0.06 OrthoFinder output from all 47 species
GSVIVT01032118001 QRT2 Cell wall.pectin.modification and... 0.06 OrthoFinder output from all 47 species
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01033362001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01033364001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.06 OrthoFinder output from all 47 species
GSVIVT01038447001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 OrthoFinder output from all 47 species
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_27331 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 OrthoFinder output from all 47 species
LOC_Os01g07790.1 QRT2, LOC_Os01g07790 Probable polygalacturonase At3g15720 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os03g59330.1 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.09 OrthoFinder output from all 47 species
LOC_Os05g20020.1 LOC_Os05g20020 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g14400.1 LOC_Os11g14400 Polygalacturonase OS=Prunus persica... 0.04 OrthoFinder output from all 47 species
Len_g55532 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17901 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19271 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
MA_101764g0010 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 OrthoFinder output from all 47 species
Msp_g31860 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11845 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42249 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03112 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64037 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001042 No alias EC_3.2 glycosylase & original description: CDS=170-1315 0.04 OrthoFinder output from all 47 species
Smo111266 ADPG2, PGAZAT Polygalacturonase OS=Chamaecyparis obtusa 0.03 OrthoFinder output from all 47 species
Smo78038 No alias Cell wall.pectin.modification and... 0.06 OrthoFinder output from all 47 species
Solyc01g100980.4.1 Solyc01g100980 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g113230.3.1 Solyc03g113230 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc03g116580.4.1 Solyc03g116580 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc04g015530.3.1 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.04 OrthoFinder output from all 47 species
Solyc04g025440.3.1 Solyc04g025440 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc07g015870.4.1 Solyc07g015870 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc08g014560.3.1 Solyc08g014560 Polygalacturonase OS=Prunus persica... 0.07 OrthoFinder output from all 47 species
Solyc10g047570.2.1 Solyc10g047570 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.07 OrthoFinder output from all 47 species
Solyc10g047590.3.1 Solyc10g047590 Polygalacturonase OS=Gossypium hirsutum... 0.05 OrthoFinder output from all 47 species
Solyc12g009420.3.1 QRT2, Solyc12g009420 Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g30681 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g39658 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006091_P001 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.03 OrthoFinder output from all 47 species
Zm00001e013553_P001 Zm00001e013553 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e017565_P001 Zm00001e017565 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e020373_P001 Zm00001e020373 polygalacturonase (PGX1) 0.03 OrthoFinder output from all 47 species
Zm00001e027720_P001 Zm00001e027720 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Zm00001e032294_P001 Zm00001e032294 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 22 80
IPR000743 Glyco_hydro_28 151 480
No external refs found!