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  5. GSVIVT01017280001

GSVIVT01017280001 (ATDEF1, PDF1A)


Aliases : ATDEF1, PDF1A

Description : Protein biosynthesis.organelle translation machineries.peptide deformylation.PDF formylmethionine deformylase


Gene families : OG0007852 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007852_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017280001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Ceric.36G060200.1 ATDEF1, PDF1A,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Gb_04790 ATDEF1, PDF1A formylmethionine deformylase (PDF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g37510.1 ATDEF1, PDF1A,... formylmethionine deformylase (PDF) 0.05 OrthoFinder output from all 47 species
Len_g14823 ATDEF1, PDF1A EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000710 ATDEF1, PDF1A EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Solyc07g015860.3.1 ATDEF1, PDF1A,... formylmethionine deformylase (PDF) 0.05 OrthoFinder output from all 47 species
Zm00001e035712_P002 ATDEF1, PDF1A,... formylmethionine deformylase (PDF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR023635 Peptide_deformylase 90 255
No external refs found!