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  5. GSVIVT01017121001

GSVIVT01017121001


Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.beta2 subunit


Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017121001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00013680 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.09 OrthoFinder output from all 47 species
AT1G79990 No alias structural molecules 0.11 OrthoFinder output from all 47 species
AT3G15980 No alias Coatomer, beta' subunit 0.06 OrthoFinder output from all 47 species
Adi_g015312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13025 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Ala_g02602 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Als_g04780 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g23306 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Als_g23307 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Aob_g06720 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Aop_g12571 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000608 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0038.g026263 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Cba_g14578 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Cba_g32368 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.33 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
Cre02.g118500 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
Dac_g05778 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Dcu_g04083 No alias subunit beta2 of coat protein complex & original... 0.12 OrthoFinder output from all 47 species
Dde_g02366 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02910 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Ehy_g08641 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Gb_26317 No alias subunit beta2 of coat protein complex 0.07 OrthoFinder output from all 47 species
LOC_Os02g11830.2 LOC_Os02g11830 subunit beta2 of coat protein complex 0.1 OrthoFinder output from all 47 species
LOC_Os02g11840.1 LOC_Os02g11840 subunit beta2 of coat protein complex 0.04 OrthoFinder output from all 47 species
LOC_Os06g05180.3 LOC_Os06g05180 Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.1 OrthoFinder output from all 47 species
Len_g05428 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Len_g12266 No alias subunit beta2 of coat protein complex & original... 0.09 OrthoFinder output from all 47 species
Len_g46090 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Len_g57302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05710 No alias subunit beta2 of coat protein complex & original... 0.12 OrthoFinder output from all 47 species
MA_10436677g0010 No alias Coatomer subunit beta-3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10436836g0020 No alias Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
MA_10436968g0010 No alias peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2... 0.05 OrthoFinder output from all 47 species
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.07 OrthoFinder output from all 47 species
Msp_g01672 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Nbi_g07405 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Ore_g10228 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Pir_g14528 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Ppi_g01343 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Sam_g08319 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Solyc03g120270.4.1 Solyc03g120270 subunit beta2 of coat protein complex 0.11 OrthoFinder output from all 47 species
Solyc06g066730.3.1 Solyc06g066730 subunit beta2 of coat protein complex 0.1 OrthoFinder output from all 47 species
Solyc12g043000.3.1 Solyc12g043000 subunit beta2 of coat protein complex 0.12 OrthoFinder output from all 47 species
Spa_g10496 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Spa_g17544 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Spa_g50190 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Tin_g02168 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e014494_P001 Zm00001e014494 subunit beta2 of coat protein complex 0.12 OrthoFinder output from all 47 species
Zm00001e024969_P001 Zm00001e024969 subunit beta2 of coat protein complex 0.13 OrthoFinder output from all 47 species
Zm00001e030001_P002 Zm00001e030001 subunit beta2 of coat protein complex 0.12 OrthoFinder output from all 47 species
Zm00001e036524_P002 Zm00001e036524 subunit beta2 of coat protein complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 158 196
IPR001680 WD40_repeat 202 240
IPR001680 WD40_repeat 245 281
IPR001680 WD40_repeat 43 68
IPR001680 WD40_repeat 116 152
IPR006692 Coatomer_WD-assoc_reg 344 788
No external refs found!