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  5. GSVIVT01017040001

GSVIVT01017040001 (TRZ4)


Aliases : TRZ4

Description : RNA processing.ribonuclease activities.RNase Z endoribonuclease


Gene families : OG0002827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017040001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00038090 TRZ4,... RNA processing.ribonuclease activities.RNase Z endoribonuclease 0.06 OrthoFinder output from all 47 species
AT3G16260 TRZ4 tRNAse Z4 0.03 OrthoFinder output from all 47 species
Adi_g014251 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Adi_g016817 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Als_g32009 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Aob_g31832 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Cba_g27395 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.31G069800.1 TRZ4, Ceric.31G069800 EC_3.1 hydrolase acting on ester bond & original... 0.06 OrthoFinder output from all 47 species
Dcu_g04954 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dde_g10517 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ehy_g12800 TRZ3 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
MA_10429994g0010 TRZ4 endoribonuclease (RNase Z) 0.03 OrthoFinder output from all 47 species
MA_110817g0010 TRZ4 endoribonuclease (RNase Z) 0.02 OrthoFinder output from all 47 species
Mp7g11230.1 TRZ3 endoribonuclease (RNase Z) 0.05 OrthoFinder output from all 47 species
Msp_g15294 TRZ3 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Msp_g47135 TRZ3 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g37231 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ppi_g08779 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ppi_g11028 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019311 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.06 OrthoFinder output from all 47 species
Smo97243 TRZ4 RNA processing.ribonuclease activities.RNase Z endoribonuclease 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027794 tRNase_Z_dom 52 108
No external refs found!