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  5. GSVIVT01016771001

GSVIVT01016771001


Description : RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component


Gene families : OG0002733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016771001
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00113670 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase III-dependent... 0.05 OrthoFinder output from all 47 species
AT1G59470 No alias No description available 0.03 OrthoFinder output from all 47 species
Adi_g019438 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Ala_g16052 No alias promotor-binding component *(TFC3) of TFIIIc... 0.05 OrthoFinder output from all 47 species
Aob_g34260 No alias promotor-binding component *(TFC3) of TFIIIc... 0.02 OrthoFinder output from all 47 species
Azfi_s0089.g042584 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Ceric.14G017100.1 Ceric.14G017100 promotor-binding component *(TFC3) of TFIIIc... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001428.4 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.04 OrthoFinder output from all 47 species
Cre12.g518107 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.01 OrthoFinder output from all 47 species
Dac_g16950 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Gb_37452 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.06 OrthoFinder output from all 47 species
Lfl_g18937 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
MA_59941g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.04 OrthoFinder output from all 47 species
MA_60759g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.06 OrthoFinder output from all 47 species
Mp1g26830.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 OrthoFinder output from all 47 species
Ore_g35774 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Ppi_g15417 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Sam_g24501 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Smo409587 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.03 OrthoFinder output from all 47 species
Solyc09g009800.3.1 Solyc09g009800 promotor-binding component TFC3 of TFIIIc transcription... 0.06 OrthoFinder output from all 47 species
Zm00001e015829_P001 Zm00001e015829 promotor-binding component TFC3 of TFIIIc transcription... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007309 TFIIIC_Bblock-bd 113 193
No external refs found!