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  5. GSVIVT01016528001

GSVIVT01016528001 (RDM12, IDN2)


Aliases : RDM12, IDN2

Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.IDN/IDP regulatory protein


Gene families : OG0002563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016528001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00226630 RDM12, IDN2,... Chromatin organisation.DNA methylation.canonical... 0.05 OrthoFinder output from all 47 species
AMTR_s00012p00228300 evm_27.TU.AmTr_v1... Factor of DNA methylation 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00012p00229720 evm_27.TU.AmTr_v1... Factor of DNA methylation 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT1G80790 No alias XH/XS domain-containing protein 0.03 OrthoFinder output from all 47 species
AT3G12550 No alias XH/XS domain-containing protein 0.03 OrthoFinder output from all 47 species
AT3G48670 RDM12, IDN2 XH/XS domain-containing protein 0.03 OrthoFinder output from all 47 species
AT5G59390 No alias XH/XS domain-containing protein 0.03 OrthoFinder output from all 47 species
GSVIVT01016527001 No alias Factor of DNA methylation 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g44230.1 RDM12, IDN2,... IDN/IDP regulatory protein of DNA methylation pathway 0.05 OrthoFinder output from all 47 species
Solyc02g077170.3.1 Solyc02g077170 Factor of DNA methylation 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g117040.3.1 Solyc03g117040 IDN/IDP regulatory protein of DNA methylation pathway 0.03 OrthoFinder output from all 47 species
Solyc05g054420.4.1 RDM12, IDN2,... IDN/IDP regulatory protein of DNA methylation pathway 0.04 OrthoFinder output from all 47 species
Solyc06g076210.3.1 Solyc06g076210 IDN/IDP regulatory protein of DNA methylation pathway 0.01 OrthoFinder output from all 47 species
Spa_g01972 RDM12, IDN2 regulatory protein of DNA methylation pathway *(IDN/IDP)... 0.03 OrthoFinder output from all 47 species
Zm00001e016919_P001 Zm00001e016919 IDN/IDP regulatory protein of DNA methylation pathway 0.04 OrthoFinder output from all 47 species
Zm00001e020386_P003 RDM12, IDN2,... IDN/IDP regulatory protein of DNA methylation pathway 0.04 OrthoFinder output from all 47 species
Zm00001e025803_P001 Zm00001e025803 IDN/IDP regulatory protein of DNA methylation pathway 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR005381 Znf-XS_domain 45 88
IPR005380 XS_domain 119 229
IPR005379 FDM1-5/IDN2_XH 507 636
No external refs found!