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  5. GSVIVT01016295001

GSVIVT01016295001 (LHCA1)


Aliases : LHCA1

Description : Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa1-type component


Gene families : OG0002748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016295001
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00040360 LHCA1,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.16 OrthoFinder output from all 47 species
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.18 OrthoFinder output from all 47 species
Adi_g076858 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.15 OrthoFinder output from all 47 species
Aev_g43112 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Ala_g16965 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.16 OrthoFinder output from all 47 species
Als_g13726 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Als_g25107 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Aob_g03905 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g13553 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16356 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g39130 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g08720 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g53140 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene39517.t1 LHCA1, Aspi01Gene39517 component *(LHCa1) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0190.g056892 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0549.g076444 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.08 OrthoFinder output from all 47 species
Cba_g09880 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g26607 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.07G087800.1 LHCA1, Ceric.07G087800 component *(LHCa1) of LHC-I complex & original... 0.22 OrthoFinder output from all 47 species
Ceric.12G030000.1 LHCA1, Ceric.12G030000 component *(LHCa1) of LHC-I complex & original... 0.19 OrthoFinder output from all 47 species
Cre06.g283050 LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.17 OrthoFinder output from all 47 species
Dac_g06854 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Dcu_g00729 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.18 OrthoFinder output from all 47 species
Dcu_g03557 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g34042 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.19 OrthoFinder output from all 47 species
Dde_g07919 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g21883 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Gb_18375 LHCA1 component LHCa1 of LHC-I complex 0.15 OrthoFinder output from all 47 species
LOC_Os06g21590.1 LHCA1, LOC_Os06g21590 component LHCa1 of LHC-I complex 0.19 OrthoFinder output from all 47 species
Len_g24144 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Lfl_g03745 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06978 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
MA_10431493g0010 LHCA1 component LHCa1 of LHC-I complex 0.09 OrthoFinder output from all 47 species
Mp2g15420.1 LHCA1 component LHCa1 of LHC-I complex 0.2 OrthoFinder output from all 47 species
Msp_g05868 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Msp_g24707 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00268 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g07161 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g30412 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Ore_g36756 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Ore_g45079 LHCA1 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Pir_g01807 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.15 OrthoFinder output from all 47 species
Pir_g01863 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Pnu_g06292 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c3_12510V3.1 LHCA1, Pp3c3_12510 photosystem I light harvesting complex gene 1 0.06 OrthoFinder output from all 47 species
Ppi_g04269 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002720 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017788 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.07 OrthoFinder output from all 47 species
Sam_g14315 No alias component *(LHCa1) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Sam_g14326 No alias component *(LHCa1) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Sam_g19176 No alias component *(LHCa1) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Smo423144 LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 OrthoFinder output from all 47 species
Solyc05g056050.3.1 LHCA1, Solyc05g056050 component LHCa1 of LHC-I complex 0.17 OrthoFinder output from all 47 species
Solyc05g056060.4.1 LHCA1, Solyc05g056060 Chlorophyll a-b binding protein 6A, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g04551 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13153 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Spa_g13154 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.16 OrthoFinder output from all 47 species
Tin_g09881 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g19220 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Zm00001e013742_P001 LHCA1, Zm00001e013742 component LHCa1 of LHC-I complex 0.15 OrthoFinder output from all 47 species
Zm00001e025141_P001 LHCA1, Zm00001e025141 component LHCa1 of LHC-I complex 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 12 166
No external refs found!