GSVIVT01015398001 (RABF2B, ATRAB-F2B,...)

Aliases : RABF2B, ATRAB-F2B, RAB-F2B, ATRABF2B, ARA7, ARA-7, ATRAB5B

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.F-class RAB GTPase

Gene families : OG0001928 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01015398001

Target	Alias	Description	ECC score	Gene Family Method
AT4G19640	RABF2B,...	Ras-related small GTP-binding family protein	0.03	OrthoFinder output from all 47 species
AT5G45130	RAB5A, RHA1,...	RAB homolog 1	0.04	OrthoFinder output from all 47 species
Aspi01Gene46708.t1	RABF2B,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g16966	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Dac_g04922	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.02	OrthoFinder output from all 47 species
Dac_g26848	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.02	OrthoFinder output from all 47 species
Gb_38734	RABF2B,...	no description available(sp\|q0ilq6\|rab5a_orysj : 137.0)	0.03	OrthoFinder output from all 47 species
MA_10435945g0010	RABF2B,...	F-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Nbi_g06553	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g11807	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006378	mRNA polyadenylation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	12	171

External Links

No external refs found!