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  5. GSVIVT01014776001

GSVIVT01014776001


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D1 component


Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014776001
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AT3G07590 No alias Small nuclear ribonucleoprotein family protein 0.06 OrthoFinder output from all 47 species
Adi_g077290 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Als_g04085 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Aob_g06290 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043309 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Ceric.39G023500.1 Ceric.39G023500 component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Dac_g32409 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
LOC_Os02g37430.1 LOC_Os02g37430 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Pp3c5_16280V3.1 Pp3c5_16280 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Sam_g42470 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Solyc06g084310.4.1 Solyc06g084310 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.13 OrthoFinder output from all 47 species
Zm00001e041053_P001 Zm00001e041053 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 2 62
No external refs found!