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  5. GSVIVT01014682001

GSVIVT01014682001


Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014682001
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AT1G30350 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G01270 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT3G24230 No alias Pectate lyase family protein 0.06 OrthoFinder output from all 47 species
AT3G27400 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G13210 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G13710 No alias Pectin lyase-like superfamily protein 0.1 OrthoFinder output from all 47 species
AT4G22090 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G55720 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
Aev_g37853 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16408 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g63228 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene17935.t1 Aspi01Gene17935 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0033.g025097 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1140 0.03 OrthoFinder output from all 47 species
Ceric.26G007400.1 Ceric.26G007400 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43009 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43847 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g00879 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03656 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007582001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os05g22800.1 LOC_Os05g22800 pectate lyase 0.05 OrthoFinder output from all 47 species
Len_g10584 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40234 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
MA_101171g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_103716g0010 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10426822g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10433252g0020 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_10437227g0020 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_1164682g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_203992g0010 No alias pectate lyase 0.06 OrthoFinder output from all 47 species
MA_91467g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_97947g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Msp_g10750 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27978 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003136 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 0.03 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc03g111690.4.1 Solyc03g111690 pectate lyase 0.03 OrthoFinder output from all 47 species
Spa_g40115 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008755_P002 Zm00001e008755 pectate lyase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 64 248
No external refs found!