GSVIVT01013772001

Description : Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana

Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01013772001

Target	Alias	Description	ECC score	Gene Family Method
Ala_g28456	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14084	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01028189001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
LOC_Os08g23790.1	LOC_Os08g23790	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.03	OrthoFinder output from all 47 species
Sam_g15323	No alias	EC_3.2 glycosylase & original description: none	0.01	OrthoFinder output from all 47 species
Smo85947	No alias	Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc08g014560.3.1	Solyc08g014560	Polygalacturonase OS=Prunus persica...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	743	1064
IPR002885	Pentatricopeptide_repeat	75	121
IPR002885	Pentatricopeptide_repeat	482	530
IPR002885	Pentatricopeptide_repeat	558	579
IPR002885	Pentatricopeptide_repeat	383	412
IPR002885	Pentatricopeptide_repeat	354	376
IPR002885	Pentatricopeptide_repeat	280	309
IPR002885	Pentatricopeptide_repeat	151	176

External Links

No external refs found!