- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : PCFS4
Description : RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component
Gene families : OG0001185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001185_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01012646001 | |
| Cluster | HCCA: Cluster_95 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00040p00210200 | evm_27.TU.AmTr_v1... | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.09 | OrthoFinder output from all 47 species | |
| AT2G36480 | No alias | ENTH/VHS family protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g019422 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g028535 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g050902 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g060938 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g18258 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g18266 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g10884 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g11854 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g21890 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g32504 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g60779 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g04503 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g13602 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g22117 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene18290.t1 | Aspi01Gene18290 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0116.g046372 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g77134 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G047300.1 | Ceric.04G047300 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.20G037600.1 | Ceric.20G037600 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.39G023900.1 | PCFS4, Ceric.39G023900 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000396.26 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001628.5 | PCFS4 | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g09800 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.09 | OrthoFinder output from all 47 species | |
| Ehy_g07114 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g07144 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g18944 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g32334 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_21315 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.06 | OrthoFinder output from all 47 species | |
| Gb_26268 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.09 | OrthoFinder output from all 47 species | |
| LOC_Os08g08830.1 | PCFS4, LOC_Os08g08830 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os09g39270.1 | LOC_Os09g39270 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.09 | OrthoFinder output from all 47 species | |
| Len_g08651 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g09019 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g14750 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g11409 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g16594 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.08 | OrthoFinder output from all 47 species | |
| MA_10040687g0010 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
| MA_10433250g0020 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| MA_132868g0010 | No alias | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.09 | OrthoFinder output from all 47 species | |
| MA_62539g0010 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp8g18940.1 | No alias | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.1 | OrthoFinder output from all 47 species | |
| Msp_g31704 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g01471 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g08557 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g13187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g43016 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.13 | OrthoFinder output from all 47 species | |
| Pir_g02318 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.07 | OrthoFinder output from all 47 species | |
| Pnu_g26223 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57483 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012185 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.08 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0061.g015402 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g12428 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc09g009120.4.1 | Solyc09g009120 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.09 | OrthoFinder output from all 47 species | |
| Solyc10g083590.2.1 | Solyc10g083590 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.11 | OrthoFinder output from all 47 species | |
| Solyc12g094490.2.1 | PCFS4, Solyc12g094490 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g05766 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g06139 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e009485_P001 | Zm00001e009485 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.13 | OrthoFinder output from all 47 species | |
| Zm00001e021648_P002 | PCFS4, Zm00001e021648 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.14 | OrthoFinder output from all 47 species | |
| Zm00001e033620_P001 | Zm00001e033620 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.11 | OrthoFinder output from all 47 species | |
| Zm00001e039948_P002 | PCFS4, Zm00001e039948 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.11 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |